Linux envrionment

Linux tutorial

bolg

• Linux Cluster Blog is a collection of how-to and tutorials for Linux Cluster and Enterprise Linux
• Linux 命令收藏

Video tutorial

• 莫烦 linux 建议教学
• Learn CentOS “LearnLinuxTV”
• 计算机科学课堂中学不到的知识 The Missing Semester of Your CS Education(2020)

Ubuntu

• List of releases
• releases downloads
• Mirror Tsinghua

CentOS

• Mirror Tsinghua Centos6
• Mirror Tsinghua Centos7 8

Fortran

tutorial

• fcode [bilibili]

-[Fortran Tuto 2] Basics about variables

• Python入门

• 零基础Python教程

doc

• ustc doc
• Mistakes in Fortran 90 Programs That Might Surprise You
• Clion Fortran

Python

anaconda

install

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  wget https://repo.anaconda.com/archive/Anaconda3-2020.11-Linux-x86_64.sh
  bash Anaconda3-2020.11-Linux-x86_64.sh

tutorial

• MorvanZhou
  https://github.com/MorvanZhou/tutorials
• Python Documentation contents
• https://www.runoob.com/python/python-tutorial.html
• Python 入門教學課程
• Python全套教程 2019最适合零基础 提供源码笔记

numpy

• Python NumPy 入門教學課程

doc NumPy 官网 http://www.numpy.org/
NumPy 源代码：https://github.com/numpy/numpy
SciPy 官网：https://www.scipy.org/
SciPy 源代码：https://github.com/scipy/scipy
Matplotlib 官网：https://matplotlib.org/
Matplotlib 源代码：https://github.com/matplotlib/matplotlib

NumPy官方文档
https://numpy.org/doc/stable/user/whatisnumpy.html

runoob
https://www.runoob.com/numpy/numpy-tutorial.html

from-python-to-numpy
https://www.labri.fr/perso/nrougier/from-python-to-numpy

julia

https://docs.julialang.org/en/v1/

https://www.youtube.com/c/TheJuliaLanguage/videos

install julia

1. download from https://julialang.org/downloads/
2. decompress

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tar zxf julia-1.6.0-linux-x86_64.tar.gz 
cd julia-1.6.0

env

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export PATH=~/julia-1.6.0/bin/:$PATH

test

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#!/usr/bin/env julia
println("Greetings! 你好! こんにちわ! 안녕하세요?")

install packages

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julia   # activate julia env

using Pkg
Pkg.add("Plots")
Pkg.add("PyPlot")

Pkg.update()
Pkg.update("Plots")
Pkg.rm("Plots")

tutorial

• Julia for Numerical Computation in MIT Courses
  https://github.com/mitmath/julia-mit
• Introduction to Computational Thinking by Alan Edelman, David P. Sanders & Charles E. Leiserson
  https://computationalthinking.mit.edu/Spring21/syllabus/

java

Java SE Development Kit 15 Downloads

git

• git命令查询
• GitHub Documentation

tutorial

• Lecture 6 - Version Control (git) (2020)
• Git 版本管理 教学 tutorial “Morvan”

complier

Intel oneAPI Base Toolkit

Intel oneAPI is the new version for free and the old version is intel parallel studio.

Document

• Intel homepage

Download from

• Free Intel® Software Development Tools
• Get the Intel® oneAPI Base Toolkit
• Get the Intel® oneAPI HPC Toolkit

Release Notes

• Intel® oneAPI Base Toolkit Release Notes
• Intel® oneAPI HPC Toolkit Release Notes

• Get Started with the Intel® oneAPI Base Toolkit for Linux*

• Get Started with the Intel® oneAPI Base Toolkit for Windows*

• Get Started with the Intel® oneAPI HPC Toolkit for Linux*

• Get Started with the Intel® oneAPI HPC Toolkit for Windows*

• Intel® Performance Libraries for oneAPI

  1. Intel® oneAPI Math Kernel Library
  2. Intel® Integrated Performance Primitives
  3. Intel® oneAPI Threading Building Blocks
  4. Intel® oneAPI Data Analytics Library
  5. Intel® MPI Library

• Intel® Parallel Studio XE and oneAPI Toolkits Supported and Unsupported Product Versions

Installation

• Intel® oneAPI Toolkits Installation Guide for Linux* OS
• Installing Intel® oneAPI Toolkits via APT

Compiler

• Intel® C++ and Fortran Compilers Redistributable Libraries by Version
• Intel® Fortran Compiler for oneAPI Release Notes

MPI Libarary

• Intel® MPI Library Release Notes

Others

• oneAPI-samples for vscode
• Intel® oneAPI Toolkit Forums

pre-install

• MacOS

  Install Xcode, then go to developer.apple.com and download Command Line Tools for your Xcode version.

• Windows

  Install latest Visual Studio Community edition

install

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sudo sh ./<installer>.sh     #launch the GUI Installer as the root 
sh ./<installer>.sh          #launch the GUI Installer as the current user

#default location
/opt/intel/oneapi

C:\Program Files (x86)\Intel\oneAPI

1. install the oneAPI Base Toolkit with these options
   threaded building blocks
   C++ compiler
   C++ Library
   Math Kernal Library
   (optional) GDB debugger
2. Install the oneAPI HPC toolkit with these options
   Intel MPI library
   Intel C++ compiler
   Intel Fortran compiler

env set

For Intel oneAPI

• linux

永久生效：vi /etc/profile or vi ~/.bashrc

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source ~/intel/oneapi/setvars.sh intel64
or
source /opt/intel/oneapi/setvars.sh

临时使用 terminal：

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source /opt/intel/oneapi/setvars.sh
or
. /opt/intel/oneapi/setvars.sh
or
~/intel/oneapi/setvars.sh

• Windows
  OneAPI command prompt is installed in Start menu. Or run setvars.bat

• MacOS

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. /opt/intel/oneapi/setvars.sh

For the intel parallel studio 2020

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source /opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin/mpivars.sh intel64

or bashrc:
export PATH=$PATH:/opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/bin
export LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2020.4.304/linux/mpi/intel64/lib

For the intel parallel studio 2018

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export PATH=$PATH:/opt/intel/impi/2018.0.128/bin64
export LD_LIBRARY_PATH=/opt/intel/impi/2018.0.128/lib64

test

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mpiicc -o test  test.c
mpirun -r ssh -f mpd.hosts -n <Number of processes>  ./test

reference

• https://zhuanlan.zhihu.com/p/347913888

GCC

• GCC, the GNU Compiler Collection [download]
• gfortran supports 95 2003 2008 2018

CMake

• CMake Community Wiki
• CMake Documentation

intel Intrinsics

• intel SSE，AVX，AVX2，AVX512 IntrinsicsGuide